First author papers

GMF G214.5-1.8 as traced by CO: I - cloud-scale CO freeze-out as a result of a low cosmic-ray ionisation rate:
Clarke, S. D. ; Makeev, V. A. ; Sánchez-Monge, Á. ; Williams, G. M. ; Tang, Y.-W. ; Walch, S. ; Higgins, R. ; Nürnberger, P. C. ; Suri, S.
Published 02/2024 MNRAS.

A Herschel study of G214.5-1.8: a young, cold and quiescent giant molecular filament on the shell of a HI superbubble:
Clarke, S. D. ; Sánchez-Monge, A. ; Williams, G. M. ; Howard, A. D. P. ; Walch, S. ; Schneider, N.
Published 02/2023 MNRAS.

RJ-plots: An improved method to classify structures objectively:
Clarke, S. D. ; Jaffa, S. E. ; Whitworth, A. P.
Published 10/2022 MNRAS.

The hierarchical fragmentation of filaments and the role of sub-filaments:
Clarke, S. D. ; Williams, G. M. ; Walch, S.
Published 08/2020 MNRAS.

Determining the presence of characteristic fragmentation length-scales in filaments:
Clarke, S. D. ; Williams, G. M. ; Ibáñez-Mejía, J. C. ; Walch, S.
Published 04/2019 MNRAS.

Synthetic CO observations of fibrous filaments: the problems of mapping from PPV to PPP:
Clarke, S. D.; Whitworth, A. P.; Spowage. R. L.; Duarte-Cabral, A.; Suri, S. T.; Jaffa, S. E.; Walch, S.;
Clark, P. C.
Published 09/2018 MNRAS.

Filamentary fragmentation in a turbulent medium:
Clarke, S. D.; Whitworth, A. P.; Duarte-Cabral, A.; Hubber, D. A.
Published 06/2017 MNRAS.

Perturbation growth in accreting filaments:
Clarke, S. D.; Whitworth, A. P.; Hubber, D. A.
Published 05/2016 MNRAS.

Investigating the global collapse of filaments using smoothed particle hydrodynamics:
Clarke, S. D.; Whitworth, A. P.
Published 05/2015 MNRAS.

Co-author papers

Alignment Parameters: Quantifying Dense Core Alignment in Star-forming Regions
Chen, W.-A. ; Tang, Y.-W. ; Clarke, S. D.
Accepted 12/2024 ApJ.

How do supernova remnants cool? II. Machine learning analysis of supernova remnant simulations
Smirnova, P. ; Makarenko, E. I. ; Clarke, S. D. ; Glukhov, E. ; Walch, S. ; Vaezzadeh, I. ; Seifried, D.
Accepted 11/2024 A&A.

Dynamical accretion flows: ALMAGAL: Flows along filamentary structures in high-mass
star-forming clusters
Wells, M. R. A. ; Beuther, H. ; Molinari, S. ; Schilke, P. ; Battersby, C. ; Ho, P. ; Sánchez-Monge, Á. ;
Jones, B. ; Scheuck, M. B. ; Syed, J. ; Gieser, C. ; Kuiper, R. ; Elia, D. ; Coletta, A. ; Traficante, A. ; Wallace, J. ; Rigby, A. J. ; Klessen, R. S. ; Zhang, Q. ; Walch, S. ; Beltrán, M. T. ; Tang, Y. ; Fuller, G. A. ; Lis, D. C. ;
Möller, T. ; van der Tak, F. ; Klaassen, P. D. ; Clarke, S. D. ; Moscadelli, L. ; Mininni, C. ; Zinnecker, H. ; Maruccia, Y. ; Pezzuto, S. ; Benedettini, M. ; Soler, J. D. ; Brogan, C. L. ; Avison, A. ; Sanhueza, P. ;
Schisano, E. ; Liu, T. ; Fontani, F. ; Rygl, K. L. J. ; Wyrowski, F. ; Bally, J. ; Walker, D. L. ; Ahmadi, A. ; Koch, P. ; Merello, M. ; Law, C. Y. ; Testi, L.
Published 10/2024 A&A.

Filamentary Network and Magnetic Field Structures Revealed with BISTRO in the High-mass Star-forming Region NGC 2264: Global Properties and Local Magnetogravitational Configurations
Wang, J.-W. ; Koch, P. M. ; Clarke, S. D. ; Fuller, G. ; Peretto, N. ; Tang, Y.-W. ; Yen, H.-W. ; Lai, S.-P. ;
Ohashi, N. ; Arzoumanian, D. ; Johnstone, D. ; Furuya, R. ; Inutsuka, S. ; Lee, C. W. ; Ward-Thompson, D. ; BISTRO consortium
Published 02/2024 ApJ.

SILCC-Zoom: the dynamic balance in molecular cloud substructures:
Ganguly, S. ; Walch, S. ; Clarke, S. D. ; Seifried, D.
Published 02/2024 MNRAS.

Unravelling the structure of magnetised molecular clouds with SILCC-zoom: sheets, filaments and fragmentation:
Ganguly, S. ; Walch, S. ; Seifried, D. ; Clarke, S. D. ; Weis, M.
Published 10/2023 MNRAS.

From bubbles and filaments to cores and disks: Gas gathering and growth of structure leading to the formation of stellar systems:
Pineda, J. E.; Arzoumaninan, D.; Andre, Ph.; Friesen, R. K.; Zavagno, A.; Clarke, S. D.; Inoue, T.; Chen, C.-Y.; Lee, Y.-N.; Soler, J. D.; Kuffmeier, M.
Published 07/2023 PPVII ASPCS.

Unveiling the formation of the massive DR21 ridge:
Bonne, L. ; Bontemps, S. ; Schneider, N. ; Simon, R. ; Clarke, S. D. ; Csengeri, T. ; Chambers, E. ; Graf, U. ; Jackson, J. M. ; Klein, R. ; Okada, Y. ; Tielens, A. G. G. M. ; Tiwari, M.
Published 07/2023 ApJ.

How do supernova remnants cool? -- I. Morphology, optical emission lines, and shocks:
Makarenko, E. I. ; Walch, S. ; Clarke, S. D. ; Seifried, D. ; Naab, T. ; Nürnberger, P. C. ; Rathjen, T.
Published 07/2023 MNRAS.

Understanding star formation in molecular clouds IV: Column density PDFs from quiescent to massive molecular clouds:
Schneider, N.; Ossenkopf-Okada, V.; Clarke, S. D.; Klessen, R. S.; Kabanovic, S.; Veltchev, T.; Bontemps, S.; Dib, S.; Csengeri, T.; Federrath, C.; Di Francesco, J.; Motte, F.; Andre, Ph.; Arzoumanian D.; Beattie, J. R.; Bonne, L. ; Didelon, P. ; Elia, D. ; Koenyves, V. ; Kritsuk, A. ; Ladjelate, B. ; Myers, Ph. ; Pezzuto, S. ; Robitaille, J. F. ; Roy, A. ; Seifried, D. ; Simon, R. ; Soler, J. ; Ward-Thompson, D.
Published 10/2022 A&A

Chaotic star formation: error bars for the star formation efficiency and column density PDF:
Jaffa, S. E. ; Dale, J. ; Krause, M.; Clarke, S. D.
Published 04/2022 MNRAS

Synthetic CO emission and the XCO factor of young molecular clouds: a convergence study:
Borchert, E. M. A. ; Walch, S. ; Seifried, D. ; Clarke, S. D. ; Franeck, A. ; Nürnberger, P. C.
Published 02/2022 MNRAS

Protostellar Outflows: a window to the past:
Rohde, P. F. ; Walch, S. ; Seifried, D. ; Whitworth, A. P. ; Clarke, S. D..
Published 02/2022 MNRAS

The impact of episodic outflow feedback on stellar multiplicity and the star formation efficiency:
Rohde, P. F. ; Walch, S. ; Clarke, S. D. ; Seifried, D. ; Whitworth, A. P. ; Klepitko, A.
Published 01/2021 MNRAS

Formation of the Musca filament: Evidence for asymmetries in the accretion flow due to a
cloud-cloud collision:
Bonne, L. ; Bontemps, S. ; Schneider, N. ; Clarke, S. D. ; Arzoumanian, D. ; Fukui, Y. ; Tachihara, K. ; Csengeri, T. ; Güsten, R. ; Ohama, A. ; Okamoto, R. ; Simon, R. ; Yahia, H. ; Yamamoto, H.
Published 12/2020 A&A.

Dense gas formation in the Musca filament due to the dissipation of a supersonic converging flow:
Bonne, L. ; Schneider, N. ; Bontemps, S. ; Clarke, S. D. ; Gusdorf, A. ; Lehmann, A. ; Steinke, M. ;
Csengeri, T. ; Kabanociv, S. ; Simon, R. ; Buchbender, C. ; Güsten, R.
Published 09/2020 A&A.

Physical Properties of the star-forming clusters in NGC 6334:
Sadaghiani, M. ; Sánchez-Monge, A. ; Schilke, P. ; Liu, H. B. ; Clarke, S. D. ; Zhang, Q. ; Girart, J. M. ;
Seifried, D. ; Aghababaei, A. ; Li, H.; Juárez, C. ; Tang, K. S.
Published 03/2020 A&A.

L1495 Revisited: A PPMAP View of a Star-Forming Filament:
Howard, A. D. P. ; Whitworth, A. P. ; Marsh, K. A. ; Clarke, S. D. ; Griffin, M. J. ; Smith, M. W. L. ;
Lomax, O. D.
Published 10/2019 MNRAS.

Dust charge distribution in the interstellar medium:
Ibáñez-Mejía, J. C. ; Walch, S. ; Ivlev, A. V. ; Clarke, S. D. ; Caselli, P. ; Joshi, P. R.
Published 05/2019 MNRAS.

On the resolution requirements for modelling molecular gas formation in solar neighbourhood conditions:
Joshi, P. R. ; Walch, S. ; Seifried, D. ; Glover, S. C. O. ; Clarke, S. D. ; Weis, M.
Published 04/2019 MNRAS.

The CARMA-NRO Orion Survey: The filamentary structure as seen in C18O emission:
Suri, S. T. ; Sanchez-Monge, A. ; Schilke, P. ; Clarke, S. D. ; Smith, R. J. ; Ossenkopf-Okada, V. ; Klessen, R. ; Padoan, P. ; Goldsmith, P. ; Arce, H. G. ; Bally, J. ; Carpenter, J. M. ; Ginsburg, A. ; Johnstone, D. ; Kauffmann, J. ; Kong, S. ; Lis, D. C. ; Mairs, S. ; Pillai, T. ; Pineda, J. E. ; Duarte-Cabral, A.
Published 03/2019 A&A.

Evolution of Hubble wedges in episodic protostellar outflows:
Rohde, P. F. ; Walch, S. ; Seifried, D. ; Whitworth, A. P. ; Clarke, S. D.
Published 02/2019 MNRAS.

Synthetic [CII] emission maps of a simulated molecular cloud in formation:
Franeck, A.; Walch, S.; Seifried, D.; Clarke, S. D.; Ossenkopf-Okada, V.; Glover, S. C. O.; Klessen, R. S.; Girichidis, P.; Naab. T.; Wunsch, R.; Clark, P. C.; Pellegrini, E.; Peters, T.
Published 12/2018 MNRAS.

J plots: a new method for characterizing structures in the interstellar medium:
Jaffa, S. E.; Whitworth, A. P.; Clarke, S. D.; Howard A. D. P.
Published 06/2018 MNRAS.